Boston
Measuring Similarity in Causal Graphs: A Framework for Semantic and Structural Analysis
Liu, Ning-Yuan Georgia, Yang, Flower, Jalali, Mohammad S.
Causal graphs are commonly used to understand and model complex systems. Researchers often construct these graphs from different perspectives, leading to significant variations for the same problem. Comparing causal graphs is, therefore, essential for evaluating assumptions, integrating insights, and resolving disagreements. The rise of AI tools has further amplified this need, as they are increasingly used to generate hypothesized causal graphs by synthesizing information from various sources such as prior research and community inputs, providing the potential for automating and scaling causal modeling for complex systems. Similar to humans, these tools also produce inconsistent results across platforms, versions, and iterations. Despite its importance, research on causal graph comparison remains scarce. Existing methods often focus solely on structural similarities, assuming identical variable names, and fail to capture nuanced semantic relationships, which is essential for causal graph comparison. We address these gaps by investigating methods for comparing causal graphs from both semantic and structural perspectives. First, we reviewed over 40 existing metrics and, based on predefined criteria, selected nine for evaluation from two threads of machine learning: four semantic similarity metrics and five learning graph kernels. We discuss the usability of these metrics in simple examples to illustrate their strengths and limitations. We then generated a synthetic dataset of 2,000 causal graphs using generative AI based on a reference diagram. Our findings reveal that each metric captures a different aspect of similarity, highlighting the need to use multiple metrics.
Self-Consistent Equation-guided Neural Networks for Censored Time-to-Event Data
Kim, Sehwan, Wang, Rui, Lu, Wenbin
Self-Consistent Equation-guided Neural Networks for Censored Time-to-Event Data Sehwan Kim 1, Rui Wang 1,2, and Wenbin Lu 3 1 Department of Population Medicine, Harvard Pilgrim Health Care Institute and Harvard Medical School, Boston, MA 2 Department of Biostatistics, Harvard School of Public Health, Boston, MA 3 Department of Statistics, North Carolina State University, Raleigh, NC March 13, 2025 Abstract In survival analysis, estimating the conditional survival function given predictors is often of interest. There is a growing trend in the development of deep learning methods for analyzing censored time-to-event data, especially when dealing with high-dimensional predictors that are complexly interrelated. Many existing deep learning approaches for estimating the conditional survival functions extend the Cox regression models by replacing the linear function of predictor effects by a shallow feed-forward neural network while maintaining the proportional hazards assumption. Their implementation can be computationally intensive due to the use of the full dataset at each iteration because the use of batch data may distort the at-risk set of the partial likelihood function. To overcome these limitations, we propose a novel deep learning approach to non-parametric estimation of the conditional survival functions using the generative adversarial networks leveraging self-consistent equations. The proposed method is model-free and does not require any parametric assumptions on the structure of the conditional survival function. We establish the convergence rate of our proposed estimator of the conditional survival function. In addition, we evaluate the performance of the proposed method through simulation studies and demonstrate its application on a real-world dataset. 1 Introduction Censored time-to-event data are widely encountered in various fields where understanding the timing of events, such as failure rates or disease progression, is critical, but the exact event times Correspondence author: Wenbin Lu, email: wlu4@ncsu.edu 1 arXiv:2503.09097v1 For example, estimating survival probability based on covariate information is essential for risk prediction, which plays a key role in developing and evaluating personalized medicine. The Kaplan-Meier (KM) estimator (Kaplan and Meier, 1958), Cox proportional hazards model (Cox, 1972), and random survival forests (Ishwaran et al., 2008) are commonly-used methods for estimating survival functions. The KM estimator is a non-parametric method suitable for population-level analyses. However, its utility is limited when the objective is to estimate conditional survival probabilities at the individual level. The Cox proportional hazards model offers a semi-parametric approach for estimating conditional survival functions, accommodating the incorporation of covariates.
Generalized moduli of continuity under irregular or random deformations via multiscale analysis
Nicola, Fabio, Trapasso, S. Ivan
Motivated by the problem of robustness to deformations of the input for deep convolutional neural networks, we identify signal classes which are inherently stable to irregular deformations induced by distortion fields $\tau\in L^\infty(\mathbb{R}^d;\mathbb{R}^d)$, to be characterized in terms of a generalized modulus of continuity associated with the deformation operator. Resorting to ideas of harmonic and multiscale analysis, we prove that for signals in multiresolution approximation spaces $U_s$ at scale $s$, stability in $L^2$ holds in the regime $\|\tau\|_{L^\infty}/s\ll 1$ - essentially as an effect of the uncertainty principle. Instability occurs when $\|\tau\|_{L^\infty}/s\gg 1$, and we provide a sharp upper bound for the asymptotic growth rate. The stability results are then extended to signals in the Besov space $B^{d/2}_{2,1}$ tailored to the given multiresolution approximation. We also consider the case of more general time-frequency deformations. Finally, we provide stochastic versions of the aforementioned results, namely we study the issue of stability in mean when $\tau(x)$ is modeled as a random field (not bounded, in general) with identically distributed variables $|\tau(x)|$, $x\in\mathbb{R}^d$.
The study of short texts in digital politics: Document aggregation for topic modeling
Nakka, Nitheesha, Yalcin, Omer F., Desmarais, Bruce A., Rajtmajer, Sarah, Monroe, Burt
Statistical topic modeling is widely used in political science to study text. Researchers examine documents of varying lengths, from tweets to speeches. There is ongoing debate on how document length affects the interpretability of topic models. We investigate the effects of aggregating short documents into larger ones based on natural units that partition the corpus. In our study, we analyze one million tweets by U.S. state legislators from April 2016 to September 2020. We find that for documents aggregated at the account level, topics are more associated with individual states than when using individual tweets. This finding is replicated with Wikipedia pages aggregated by birth cities, showing how document definitions can impact topic modeling results.
Generalization of CNNs on Relational Reasoning with Bar Charts
Cui, Zhenxing, Chen, Lu, Wang, Yunhai, Haehn, Daniel, Wang, Yong, Pfister, Hanspeter
--This paper presents a systematic study of the generalization of convolutional neural networks (CNNs) and humans on relational reasoning tasks with bar charts. We first revisit previous experiments on graphical perception and update the benchmark performance of CNNs. We then test the generalization performance of CNNs on a classic relational reasoning task: estimating bar length ratios in a bar chart, by progressively perturbing the standard visualizations. We further conduct a user study to compare the performance of CNNs and humans. Our results show that CNNs outperform humans only when the training and test data have the same visual encodings. Otherwise, they may perform worse. We also find that CNNs are sensitive to perturbations in various visual encodings, regardless of their relevance to the target bars. Y et, humans are mainly influenced by bar lengths. Our study suggests that robust relational reasoning with visualizations is challenging for CNNs. Improving CNNs' generalization performance may require training them to better recognize task-related visual properties. EEP neural networks, especially convolutional neural networks (CNNs), are increasingly being adopted in the visualization community for many tasks such as visual question answering [33], [34], automatic visualization design [3], and chart captioning [35], [44]. Despite their widespread use, the crucial question of how well these models generalize to previously unseen visualizations remains less explored. Understanding and enhancing this generalization ability is crucial for the real-world deployment of CNNs. Graphical perception [5] refers to the human ability to decode visually encoded quantities in visualizations. It plays a foundational role in understanding the relations between visual elements, such as the bar length ratios in bar charts. Zhenxing Cui is with the School of Computer Science and Technology, Shandong University, China. Lu Chen is with the State Key Lab of CAD&CG, Zhejiang University, China. Y unhai Wang is with the School of Information, Renmin University of China, China. Daniel Haehn is with the College of Science and Mathematics, University of Massachusetts Boston, USA.
Representation Learning to Advance Multi-institutional Studies with Electronic Health Record Data
Zhou, Doudou, Tong, Han, Wang, Linshanshan, Liu, Suqi, Xiong, Xin, Gan, Ziming, Griffier, Romain, Hejblum, Boris, Liu, Yun-Chung, Hong, Chuan, Bonzel, Clara-Lea, Cai, Tianrun, Pan, Kevin, Ho, Yuk-Lam, Costa, Lauren, Panickan, Vidul A., Gaziano, J. Michael, Mandl, Kenneth, Jouhet, Vianney, Thiebaut, Rodolphe, Xia, Zongqi, Cho, Kelly, Liao, Katherine, Cai, Tianxi
The adoption of EHRs has expanded opportunities to leverage data-driven algorithms in clinical care and research. A major bottleneck in effectively conducting multi-institutional EHR studies is the data heterogeneity across systems with numerous codes that either do not exist or represent different clinical concepts across institutions. The need for data privacy further limits the feasibility of including multi-institutional patient-level data required to study similarities and differences across patient subgroups. To address these challenges, we developed the GAME algorithm. Tested and validated across 7 institutions and 2 languages, GAME integrates data in several levels: (1) at the institutional level with knowledge graphs to establish relationships between codes and existing knowledge sources, providing the medical context for standard codes and their relationship to each other; (2) between institutions, leveraging language models to determine the relationships between institution-specific codes with established standard codes; and (3) quantifying the strength of the relationships between codes using a graph attention network. Jointly trained embeddings are created using transfer and federated learning to preserve data privacy. In this study, we demonstrate the applicability of GAME in selecting relevant features as inputs for AI-driven algorithms in a range of conditions, e.g., heart failure, rheumatoid arthritis. We then highlight the application of GAME harmonized multi-institutional EHR data in a study of Alzheimer's disease outcomes and suicide risk among patients with mental health disorders, without sharing patient-level data outside individual institutions.
On Accelerating Deep Neural Network Mutation Analysis by Neuron and Mutant Clustering
Mutation analysis of deep neural networks (DNNs) is a promising method for effective evaluation of test data quality and model robustness, but it can be computationally expensive, especially for large models. To alleviate this, we present DEEPMAACC, a technique and a tool that speeds up DNN mutation analysis through neuron and mutant clustering. DEEPMAACC implements two methods: (1) neuron clustering to reduce the number of generated mutants and (2) mutant clustering to reduce the number of mutants to be tested by selecting representative mutants for testing. Both use hierarchical agglomerative clustering to group neurons and mutants with similar weights, with the goal of improving efficiency while maintaining mutation score. DEEPMAACC has been evaluated on 8 DNN models across 4 popular classification datasets and two DNN architectures. When compared to exhaustive, or vanilla, mutation analysis, the results provide empirical evidence that neuron clustering approach, on average, accelerates mutation analysis by 69.77%, with an average -26.84% error in mutation score. Meanwhile, mutant clustering approach, on average, accelerates mutation analysis by 35.31%, with an average 1.96% error in mutation score. Our results demonstrate that a trade-off can be made between mutation testing speed and mutation score error.
2 Massachusetts men arrested for flying drone 'dangerously close' to Boston airport
Belleville, New Jersey mayor Michael Melham joins'Fox News Live' to discuss growing concern over mysterious drone sightings. Two Massachusetts men who flew a drone "dangerously close" to Logan International Airport in Boston are facing charges, police say. Robert Duffy, 42, of Boston's Charlestown neighborhood and Jeremy Folcik, 32, of Bridgewater were taken into custody late Saturday night on Long Island, which is located on the approach to the airport, according to the Boston Police Department. "The incident began earlier that evening, at 4:30 PM, when a Boston Police Officer specializing in real-time crime surveillance detected an Unmanned Aircraft System (UAS) operating dangerously close to Logan International Airport," police said in a statement. "Leveraging advanced UAS monitoring technology, the Officer identified the drone's location, altitude, flight history, and the operators' position on Long Island."
Using Instruction-Tuned Large Language Models to Identify Indicators of Vulnerability in Police Incident Narratives
Relins, Sam, Birks, Daniel, Lloyd, Charlie
Objectives: Compare qualitative coding of instruction tuned large language models (IT-LLMs) against human coders in classifying the presence or absence of vulnerability in routinely collected unstructured text that describes police-public interactions. Evaluate potential bias in IT-LLM codings. Methods: Analyzing publicly available text narratives of police-public interactions recorded by Boston Police Department, we provide humans and IT-LLMs with qualitative labelling codebooks and compare labels generated by both, seeking to identify situations associated with (i) mental ill health; (ii) substance misuse; (iii) alcohol dependence; and (iv) homelessness. We explore multiple prompting strategies and model sizes, and the variability of labels generated by repeated prompts. Additionally, to explore model bias, we utilize counterfactual methods to assess the impact of two protected characteristics - race and gender - on IT-LLM classification. Results: Results demonstrate that IT-LLMs can effectively support human qualitative coding of police incident narratives. While there is some disagreement between LLM and human generated labels, IT-LLMs are highly effective at screening narratives where no vulnerabilities are present, potentially vastly reducing the requirement for human coding. Counterfactual analyses demonstrate that manipulations to both gender and race of individuals described in narratives have very limited effects on IT-LLM classifications beyond those expected by chance. Conclusions: IT-LLMs offer effective means to augment human qualitative coding in a way that requires much lower levels of resource to analyze large unstructured datasets. Moreover, they encourage specificity in qualitative coding, promote transparency, and provide the opportunity for more standardized, replicable approaches to analyzing large free-text police data sources.
Analyzing Multimodal Features of Spontaneous Voice Assistant Commands for Mild Cognitive Impairment Detection
Lin, Nana, Zhu, Youxiang, Liang, Xiaohui, Batsis, John A., Summerour, Caroline
Mild cognitive impairment (MCI) is a major public health concern due to its high risk of progressing to dementia. This study investigates the potential of detecting MCI with spontaneous voice assistant (VA) commands from 35 older adults in a controlled setting. Specifically, a command-generation task is designed with pre-defined intents for participants to freely generate commands that are more associated with cognitive ability than read commands. We develop MCI classification and regression models with audio, textual, intent, and multimodal fusion features. We find the command-generation task outperforms the command-reading task with an average classification accuracy of 82%, achieved by leveraging multimodal fusion features. In addition, generated commands correlate more strongly with memory and attention subdomains than read commands. Our results confirm the effectiveness of the command-generation task and imply the promise of using longitudinal in-home commands for MCI detection.